About¶
Group inference and reporting of neuroimaging studies require that individual’s features are spatially aligned into a common frame where their location can be called standard. To that end, a multiplicity of brain templates with anatomical annotations (i.e., atlases) have been published. However, a centralized resource that allows programmatic access to templates is lacking. TemplateFlow is a modular, version-controlled resource that allows researchers to use templates “off-the-shelf” and share new ones.
Contents¶
What’s new¶
0.5.2 (March 20, 2020)¶
Patch release in the 0.5 series, adding a soft brainmask for numerical stability in
floating-point rounding of atlas-based brain-extraction methods using the
MNI152NLin2009cAsym
template.
0.5.1 (March 20, 2020)¶
Patch of the new 0.5.x series, including a new rodent template
and file fixes for fsaverage
and fsLR
templates.
MAINT: Drop Python 3.5 (#36)
0.5.0 (March 12, 2020)¶
This release has been removed and should not be used.
Version 0.4.2 (January 28, 2020)¶
Patch release including a bugfix, adding a DataLad pin, and making PyBIDS pin more flexible.
MAINT: Update PyBIDS pin and DataLad pin
FIX: Density key (#31)
Version 0.4.1 (July 22, 2019)¶
First release after a deep revision of the tests and the continuous integration setup. Also includes minor reliability improvements over the previous release and some bugfixes.
MAINT: Testing Automatically update CHANGES after merge (51988f8) (#27)
MAINT: Enable code coverage collection (#25)
MAINT: Switch to a
setup.cfg
-style of installation (#24)FIX: Check and update
$HOME
if needed with every installation (#20)FIX: Do not merge branches into master when pushing back skell (#19)
FIX: Commit newly generated S3 skeletons back to repo (#17)
FIX: Add
extension
entity for selection (#16) @effigies
Version 0.4.0 (July 9, 2019)¶
MAINT: Use PyBIDS 0.9.x (#15) @effigies
Version 0.3.0 (June 4, 2019)¶
ENH: Add
MNIInfant
template.
Version 0.2.0 (June 4, 2019)¶
ENH: Added
MNIPediatricAsym
template.ENH: Updated spec to allow several cohorts (
cohort-
).
Version 0.1.9 (May 28, 2019)¶
ENH: Added the Schaefer 2018 atlas) to
MNI152NLin6Asym
.ENH: Mapped the Schaefer atlas and the Harvard-Oxford atlas into
MNI152NLin2009cAsym
.
Version 0.1.8 (May 9, 2019)¶
ENH: Added FSL’s Harvard-Oxford template to
MNI152NLin6Asym
.
Version 0.1.7 (April 3, 2019)¶
ENH: New release including bugfixes for
MNI152NLin2009cAsym
(particularly https://github.com/templateflow/tpl-MNI152NLin2009cAsym/commit/6e6d5915c7d8055d4af5efbf5e5457a0ab3246b9)
Version 0.1.6 (March 29, 2019)¶
ENH: Finish adding
MNI152NLin6Sym
after curation of NIfTI volumes and exporting to S3.
Version 0.1.5 (March 29, 2019)¶
ENH: Add volumetric data to the
fsLR
template.ENH: Rename the segmentation of subcortical structures to be consistent with the new files.
Version 0.1.4 (March 28, 2019)¶
ENH: New release to include the new
MNI152NLin6Asym
template (the default MNI template of FSL).
Version 0.1.3 (March 14, 2019)¶
FIX: Update TemplateFlow skeleton to include
tpl-fsaverage/tpl-fsaverage_dseg.tsv
, after TemplateFlow update.
Version 0.1.2 (March 12, 2019)¶
FIX:
api.get
- robuster fetcher algorithm (allows S3 download on DL repos) and better error messages (#10)
Version 0.1.1 (March 12, 2019)¶
FIX: Require environment variable to use DataLad (#8)
Version 0.1.0.post1 (March 05, 2019)¶
ENH: Testing a better
.zenodo.json
settings.
Version 0.1.0 (March 05, 2019)¶
ENH: First minimally functional TemplateFlow client release.
Version 0.0.5.post1 (March 04, 2019)¶
Hotfix release to retrieve correct version when pip installed.
MAINT: Add a
.zenodo.json
file.
Version 0.0.5 (March 04, 2019)¶
ENH: Datalad-free alternative for TemplateFlow (#7)
ENH: Use a BIDSLayout to index TemplateFlow (#6)
Version 0.0.4 (January 18, 2019)¶
ENH: Add a
get_metadata
utility
Version 0.0.3 (January 16, 2019)¶
ENH: Add
api.templates()
+ one doctest
Version 0.0.2 (January 16, 2019)¶
ENH: Add one doctest
Version 0.0.1 (January 16, 2019)¶
ENH: First functional release